Got my work truck back today, seems to be fixed, although I did notice they left a few loose ends (loose nuts on the tranny crossmember bolts for one). I will have to take some time to go over it better tomorrow. They ended up replacing the transfer case (something internal broke). While they were working on that, they realized the flywheel bolts were loose and it was wobbling, causing damage to the clutch as well. The clutch in it has never been right, it never engaged the same two times in a row. Hopefully this gets it all fixed up, we'll see.